rs49929091 SNP Detail

Summary

• ID
  rs49929091
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:41767262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCGTTCAA CTCAGCTGTT
  CTGGCTCTGT CTAACTCGTC TTCAAGCTGA CTGATTCAGT CTGGTTTCTC TCAGCTTCTC
  ACTGAATTGC TCTACTTGGC CTCAAACTAA CTATGGCAAT TTGTCATAAG CTTCTGCTTC
  CTTATTCTCT TCTTTCAACT GCTTCCCCTG ACCTTCACTG AACTGCACAT ACAGATTCAA
  H
  GCCACTTTAC TGCATTCCCA ATTGACTCCC AACTGATTTA CTCTCTCCCT GCACTTCTCT
  TAAATAGCTT TTCTTTCCTG TGCTGTTTTC CAGGGAGTTG GGCGTATCCT ATCTCTGATT
  CATTTTTGTC AAATATTCTC TGATTCTGCA CGTTGTCTGC ACCTCAATTA AACACCACTT
  TTAACCATGG CTGCTCCCTT                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147730511	ENSMUSSNP4874133	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss324937471	CHEV_15_41735412	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49929091					SNP	T	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:41767262 () rs orientation: forward

Symbol	Name	Function Class
Rr390657	regulatory region 390657	525 bp upstream