rs49929354 SNP Detail

Summary

• ID
  rs49929354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85342371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCACTTT GTGGTTGCTA
  GGATTTGAAC TCAGGATCAT CTCTCCAGCC CCACCCACAG TCTGCTTTTA AATCTTACTG
  CTCACACCTT GAACCAGACC AGTGCTCGTT TACAGCACTT GGCAGCTGCT TCCTCTCCAC
  TTTCCCTGTC CTTCCATCAG CTTCCGCTTG TAGGCAAGGC TGGTTCCTTA ATGTAAAAAG
  Y
  TAACACAGAA CCTGGAGAGG TGGCACAGCA GTTAAGAGCA TCGACTGCTC TTCCAGAGGA
  GCCAGTTCCC GGCATATACA CTGGGTAGCA TACAGCTACC TGTAACTTTG GCCCTAGGGT
  ATCAGACATT GTCTCTAGCT TCCATTCCCA TGCACATATG ACATATATAC ATATGACCAT
  GAATTCACAT AGATAAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146149194	ENSMUSSNP4265875	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49929354					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85342371 () rs orientation: forward

Symbol	Name	Function Class
Rr343448	regulatory region 343448	371 bp distal
Slc3a1	solute carrier family 3, member 1	within coordinates
Tssr146077	transcription start site region 146077	1308 bp downstream