rs49929989 SNP Detail

Summary

• ID
  rs49929989
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13426894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAACTCTT TTTTTTTTTT
  TTTTTTTTCG AGACAGGGTT TCTCTGTGTA GCCCTGGCTG TCCTGGAACT CACTCTGAAG
  ACCAGGCTGG CCTCAAACTC AGAAATTTAC CTGCCTCTGC CTTCCAAGTG CTGGGATTAA
  AGGTGTGCAC CATCACTGCC CCGCTCAGGT TCAACTCTTT TTTTTTATTT TCTGAGACAG
  G
  GTTTCTCTGT ATAGCCCTGG CTGTCCTGGA ACTCACTTTG TAGACCAGGC TGGCCTCGAA
  CTCAGAAATC CGCCTGTCTC TGCCTCCGGA GTGCTGGGAT TAAAGGCGTG CACCACCACA
  CCCGGCCAGA TTCAACTCTT TTAAGACTTT TTGTTTTGCT AAAAAAGCAA TAGTGCTTCG
  ATTATACCTT TGAATCTCTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146822586	ENSMUSSNP2265279	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49929989					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13426894 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	1757 bp upstream
Cpgi1315	CpG island 1315	1701 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	1789 bp upstream
Rr427802	regulatory region 427802	1417 bp proximal
Rr427803	regulatory region 427803	1678 bp proximal
Rr427804	regulatory region 427804	1755 bp proximal
Rr427805	regulatory region 427805	1960 bp proximal
Tssr96771	transcription start site region 96771	1705 bp downstream
Tssr96772	transcription start site region 96772	1849 bp downstream
Tssr96773	transcription start site region 96773	1913 bp downstream
Tssr96774	transcription start site region 96774	1961 bp downstream
Tssr96775	transcription start site region 96775	1990 bp downstream