rs49930115 SNP Detail

Summary

• ID
  rs49930115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115471238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGGACGG AAATCAGTGC
  TGCATCTTCA TGGGCTGCTC TGCTCGGAGA TGGGGCCCGA GGGGCCCGTT TTGTTCAGAA
  ATATATTTTA AATGTTTAGT AATTGGCGTG CAGTTGTCTT TGATTGAGTA TGTAGGTTTC
  ATCTGATAGG TACTGACCAA AGAGAACCAT CATTTGAGTT GTCATGGAAG TTTGTAAGGA
  R
  CAGAAACTTC ATCACTCTGC CAGAGTAATG GTGGCGATTG TAAAAAATCA GCACCAAAGG
  CAGACTCTGT TTTTTTTATT TTAAAGGTTG GTTTTTATTT ACATGTTTAT GCCGCGTGTG
  TGTTAGTGCC TACAGAGGCC AGAAAGACAG CATCAACCCC TGTGGAGCTG GAATTGCAGG
  AGGTCATGGG TCACCTTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60829332	NES16021084	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49930115					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60829332	NES16021084	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115471238 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	63 bp downstream
Srsf9	serine and arginine-rich splicing factor 9	99 bp downstream
Tssr48220	transcription start site region 48220	386 bp downstream
Tssr48221	transcription start site region 48221	307 bp downstream
Tssr52783	transcription start site region 52783	850 bp downstream
Tssr52784	transcription start site region 52784	889 bp downstream
Tssr52785	transcription start site region 52785	919 bp downstream
Tssr52786	transcription start site region 52786	1045 bp downstream
Tssr52787	transcription start site region 52787	1090 bp downstream
Tssr52788	transcription start site region 52788	1300 bp downstream
Tssr52789	transcription start site region 52789	1337 bp downstream