rs49930882 SNP Detail

Summary

• ID
  rs49930882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55907853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATCCCA GAACTCACAT
  GGTGGCTCAC AACTACCTGT AATTCCAGTT CCAGGGAATC TAGTGGCCTC CTTGGGCACC
  ACCAGGCACA CAGGTGCCAA GACATATAAG CACGGACAGC ACCCATACAC ACACATATAC
  TAAAGATGCG ATTTAAAAAA AAAGAATAGG CAGGTGCTGC AGAACAGAAG TTAGACAATA
  Y
  TAAGACGATG TCTGCCTGTA ATCCTAGCCT CTGGCGGTTC ACATGCAGCA GGCTGTGAGA
  CTGTGGATGG GGGGCTGGGG GTGGGCTGCT TGTCTTAGCA ATTAGAGGGC TAACACAGGT
  GGATCTCCAC AAGCTTGAGA GCAGCCTAGG CTACAGAGGC TGGTTCAAAA TCCCAAGTAA
  TCCTCCACCT CCACCACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62405535	NES17238162	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49930882					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62405535	NES17238162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55907853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6505	CpG island 6505	1240 bp proximal
Gmpr2	guanosine monophosphate reductase 2	1545 bp upstream
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	within coordinates
Rr492562	regulatory region 492562	723 bp proximal
Rr492563	regulatory region 492563	1638 bp proximal
Rr492564	regulatory region 492564	1718 bp proximal
Tssr125802	transcription start site region 125802	755 bp upstream
Tssr125803	transcription start site region 125803	1854 bp upstream
Tssr125804	transcription start site region 125804	1912 bp upstream
Tssr125805	transcription start site region 125805	1975 bp upstream
Tssr128855	transcription start site region 128855	1462 bp downstream
Tssr128856	transcription start site region 128856	1477 bp downstream
Tssr128857	transcription start site region 128857	1668 bp downstream
Tssr128858	transcription start site region 128858	1740 bp downstream
Tssr128859	transcription start site region 128859	1773 bp downstream
Tssr128860	transcription start site region 128860	1797 bp downstream