rs49931795 SNP Detail

Summary

• ID
  rs49931795
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5916130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG GGAGTGATGT CAATTTGGTC
  R
  TTTGATTGCC ATCTAGAAAC GGATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss52612666	NES15506750	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G		G	A	A
ss324224102	CHEV_13_5865377	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs49931795					SNP	G	G	G	G	G	G	A	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52612666	NES15506750	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5916130 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr403559	regulatory region 403559	1290 bp downstream
Tssr118248	transcription start site region 118248	1634 bp downstream
Tssr118249	transcription start site region 118249	1429 bp downstream
Tssr118250	transcription start site region 118250	1363 bp downstream
Tssr118251	transcription start site region 118251	1328 bp downstream
Tssr118252	transcription start site region 118252	1270 bp downstream
Tssr118253	transcription start site region 118253	279 bp upstream
Tssr118254	transcription start site region 118254	306 bp upstream
Tssr118255	transcription start site region 118255	1436 bp upstream
Tssr118256	transcription start site region 118256	1482 bp upstream
Tssr118257	transcription start site region 118257	1564 bp upstream
Tssr118258	transcription start site region 118258	1606 bp upstream
Tssr118259	transcription start site region 118259	1755 bp upstream
Tssr118260	transcription start site region 118260	1784 bp upstream
Tssr118261	transcription start site region 118261	1952 bp upstream
Tssr121319	transcription start site region 121319	1817 bp upstream
Tssr121320	transcription start site region 121320	1780 bp upstream
Tssr121321	transcription start site region 121321	1769 bp upstream
Tssr121322	transcription start site region 121322	1728 bp upstream
Tssr121323	transcription start site region 121323	1713 bp downstream