rs49931872 SNP Detail

Summary

• ID
  rs49931872
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:47536433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCG CTTGCAGTAG GGAGGTGTGG
  A
  TGCTGTGGCT TGTGGTACTC CATAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136436046	ENSMUSSNP5016762	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322947346	CHEV_9_47433218	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49931872					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:47536433 () rs orientation: forward

Symbol	Name	Function Class
Cadm1	cell adhesion molecule 1	within coordinates
Gm70246	predicted gene, 70246	within coordinates
Rr678285	regulatory region 678285	776 bp distal
Rr678286	regulatory region 678286	within coordinates
Tssr84930	transcription start site region 84930	1844 bp downstream