rs49934306 SNP Detail

Summary

• ID
  rs49934306
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAAACTAC CCAGAAAGCC
  CAACCTGAAA ACCTACAGAA ACAAGATTAC TCTTCTGTCA GCTCCAGCTC CAAGGATTTA
  GAGCCATGAT GAACAGATAG CCAATAGTGC CCATGGCCCT TAGACTAGGG CCATTTTCCT
  CATGGGGTGG ATTCAGACAT GACAGGTAAG GAGGGGGATA GCAGATGTAA CTCTTCAACC
  S
  GGTAGAAAAG AACCAAGGCT GCAAACATGA CATACAGCAA TACTTCTGGA GCCGCAGCGC
  CTGAGAAACT CTTATAAACT GTCTTGGAGA ACTGGTTTAT GCTTTGAAGA CAATTCAAGT
  AGCCCTCTGG ATAGTTAACT TTCTCGGGAG TGGATATTTT TTCTTGTTGA AACCAAAGAC
  TCCCATTATT ACCTGCACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146251713	ENSMUSSNP4553381	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49934306					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	675 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	1002 bp upstream
Tssr37060	transcription start site region 37060	1016 bp upstream
Tssr37061	transcription start site region 37061	1028 bp upstream
Tssr37062	transcription start site region 37062	1061 bp upstream
Tssr41531	transcription start site region 41531	913 bp downstream
Tssr41532	transcription start site region 41532	1019 bp downstream
Tssr41533	transcription start site region 41533	1105 bp downstream
Tssr41534	transcription start site region 41534	1223 bp downstream