rs49934482 SNP Detail

Summary

• ID
  rs49934482
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:76023105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAACTGAG TGCTTGAGCT AGAGGACAGG TGCACAGTTT
  TGTTAACGGG CTGAATATAT CTATCAAAAG CCAATGCTTT TGATAGACTC TGGATCCCAT
  K
  TTTTTGTGAC AGTGTGTAGA GCAGAAAGAG GCCAAGATGG TTTTCAGGTT CTGTGCGTCA
  CCACTAAGAC ATTATACAGA CATGGAGGGG AGCCCAGAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52665154	NES15472135	PERLEGEN	MM_PANEL2	f	SNP			T	G			G	T	T	G		G
ss144640725	ENSMUSSNP2149757	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T
ss324437446	CHEV_13_76012434	CHEVERUD	SCREENING_POP	f	SNP						T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49934482					SNP	T	T	T	G	T	T	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665154	NES15472135	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:76023105 () rs orientation: forward

Symbol	Name	Function Class
Rhobtb3	Rho-related BTB domain containing 3	within coordinates
Rr273737	regulatory region 273737	496 bp proximal
Rr277199	regulatory region 277199	95 bp proximal
Rr277200	regulatory region 277200	496 bp proximal
Rr277201	regulatory region 277201	1296 bp proximal
Rr277202	regulatory region 277202	1696 bp proximal