rs49935876 SNP Detail

Summary

• ID
  rs49935876
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152535885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT GCCCGGCAGC AGCCACAGGG
  M
  TCTTTCTGGA CCGGTTTAGG CGCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147971972	ENSMUSSNP2187469	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320563172	CHEV_2_152519701	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49935876					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152535885 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			1280 bp downstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567430	regulatory region 567430			1747 bp distal
Rr567431	regulatory region 567431			1848 bp distal
Rr567432	regulatory region 567432			114 bp distal
Rr567433	regulatory region 567433			524 bp distal
Rr567434	regulatory region 567434			768 bp proximal
Tssr20823	transcription start site region 20823			1021 bp upstream
Tssr20824	transcription start site region 20824			1493 bp upstream
Tssr20825	transcription start site region 20825			1542 bp upstream