rs49935986 SNP Detail

Summary

• ID
  rs49935986
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:18293957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACAAAA GAAAGAGAAC
  TGGGAGCTTC ATGTTGATGA GTAGTTCACA GCAGAGCTTT CAGGGTCTTT ATATGAGAGA
  ATGATGGGCA ATTGTTGTCT TTTCTGTCTC TCCCTGCAGT GGTAGGAATG CAGTCATTCA
  TGTTTATCAA GTTACTGATC TGTTTATCTG TGCCTGAGGC AAAAGGGTCA ACATTCCTTC
  K
  CTTTCATCTT GAGGCCATAA AAGCATTGTC AGCTGACGGT TTTGGTTCTA AGTAACTTTT
  TTTTTTTTTT TTTTTAGAAA GGCAAATGTC ATTGGTGACA TTCTTCGGGA TGTCCTGGGG
  GATGTAGAAC TTAATCTTTG CTTTTCTAAT CTCTGCTTAA ACACCTGTGT ATACTATAAA
  TCATCTGCAA AGTTTACAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148689420	ENSMUSSNP5313140	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49935986					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:18293957 () rs orientation: forward

Symbol	Name	Function Class
Defb44-ps	defensin beta 44, pseudogene	169 bp upstream
Gm71262	predicted gene, 71262	64 bp upstream
Tssr11066	transcription start site region 11066	151 bp upstream
Tssr11067	transcription start site region 11067	125 bp upstream