rs49936498 SNP Detail

Summary

• ID
  rs49936498
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4501822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTCAGG GTCAAGGGAG
  GGCATCCACA CGGGGTATAC CGGAATCTGA TACTGACGCC GCGTTGTCTG CTGGGGTTTG
  TAGTTCCTGC CAGGGCAAGG CTCGCTAGAT TATGGTTGCT GCACTCAGCG ACAACATTCA
  CAAGTAAAGT GCAGCATTCG TTCCTACCTC ACAAAATTCC AATACAGGGA AAAGTTACAA
  W
  CTGACATCCT CATAGTCTAG CACTTGTACA CGTTGGCCTA GGTTCTACCG TTCGGAGACC
  GAGGCGCGTG CGCAATGCTT ACGCTCTGCG TGCTACGGAT GCCTCGCCTC CGGAAGACGC
  GACCGGCGAG GCGGGCCAGT GACGGTCTGC GCAGGCGCAG TGTCCCCGGG CCAAAATGGC
  TGCGTGGTGT TCCCCACGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63636401	NES17047697	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49936498					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63636401	NES17047697	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4501822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7918	CpG island 7918	within coordinates
Dnaja3	DnaJ heat shock protein family (Hsp40) member A3	112 bp upstream
Rr370034	regulatory region 370034	99 bp downstream
Rr391260	regulatory region 391260	1655 bp downstream
Rr510906	regulatory region 510906	within coordinates
Rr510907	regulatory region 510907	441 bp proximal
Tssr136865	transcription start site region 136865	141 bp upstream
Tssr136866	transcription start site region 136866	271 bp upstream