rs49936672 SNP Detail

Summary

• ID
  rs49936672
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84468508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA GCAGAGGCTA AACCGGAGGC
  C
  GTTTTTGGCC ACTTAAGAGT TGCAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145361175	ENSMUSSNP6011439	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49936672					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84468508 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	696 bp upstream
Cpgi20655	CpG island 20655	189 bp distal
Gm46046	predicted gene, 46046	within coordinates
Rr368559	regulatory region 368559	1741 bp downstream
Rr666301	regulatory region 666301	619 bp distal
Rr666302	regulatory region 666302	510 bp distal
Rr666303	regulatory region 666303	within coordinates
Rr666304	regulatory region 666304	337 bp proximal
Tssr2618	transcription start site region 2618	1766 bp upstream
Tssr2619	transcription start site region 2619	1478 bp downstream
Tssr2620	transcription start site region 2620	582 bp downstream
Tssr2621	transcription start site region 2621	676 bp upstream
Tssr78291	transcription start site region 78291	1523 bp downstream
Tssr78292	transcription start site region 78292	1501 bp downstream
Tssr78293	transcription start site region 78293	1360 bp downstream
Tssr78294	transcription start site region 78294	1305 bp downstream
Tssr78295	transcription start site region 78295	1259 bp downstream
Tssr78296	transcription start site region 78296	1240 bp downstream
Tssr78297	transcription start site region 78297	445 bp downstream
Tssr82049	transcription start site region 82049	1809 bp upstream
Tssr82050	transcription start site region 82050	1721 bp upstream
Tssr82051	transcription start site region 82051	1447 bp upstream
Tssr82052	transcription start site region 82052	689 bp upstream