rs49937825 SNP Detail

Summary

• ID
  rs49937825
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41116319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAGGATAA GAAGCTTGGC TGTATGGGAA ATGTAGTTGA
  AGATGAGCCT GGGGTTGAGA TGGTGGAGCA CTGCTTTCTC GGCTTCTGCT TCAGTCCCAC
  T
  GGCAACATCT GTCCTTTTGA TGATGGACAG TGACCTACAA GTTAAAATAA ACCCTTTCCT
  CCCCAACTCA TTTTTGGTCC TGGTGTCTAT CACAGCAAC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136348396	ENSMUSSNP6544492	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322923630	CHEV_9_41013106	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49937825					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41116319 () rs orientation: forward

Symbol	Name	Function Class
1700063D05Rik	RIKEN cDNA 1700063D05 gene	1132 bp upstream
Gm68881	predicted gene, 68881	428 bp downstream
Rr194790	regulatory region 194790	119 bp distal
Rr194791	regulatory region 194791	282 bp proximal
Rr383259	regulatory region 383259	1494 bp upstream
Tssr2832	transcription start site region 2832	1163 bp upstream
Tssr84492	transcription start site region 84492	1129 bp upstream