CATGAGGCAG CTTTGTCCTC TCCCAATTCT GCATCTTTGT CAGATATAGG AATGGACACA TGGTCCCCAC TTCAAGATAT TTAAACTGGG ACCACAGAGA AAGACTTGTT CTCCGTTGCA TGGCATGTCA ATCAATGGGG ACTAAAAGGA CAAGTAAGCA CAATTTGGGA GCCAAATGGA GAAGAACCTT AGTAGATGGA R CCCAGTCATT AAGAGAAGCT GAGACAATAG CCATTAAAAT GTCTAGCACA TGGCAGGCAC TTATACAAAA ACATGCATGT GCACATGTGC ATGTGGGTGT GGTATATGCA TAGTTCCATG TAAAGCCATT GTCTTCTTAG ATACTAAGAG AGGAATTTCT CCAAGTAAGT TGTTAGATGC AGAGCACCTC CACCCACACC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss52287013 | NES15353690 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
||||
rs49939235 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss52287013 | NES15353690 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr12:12582774 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr266588 | regulatory region 266588 | 975 bp distal | ||||||
Rr266589 | regulatory region 266589 | 1828 bp proximal | ||||||
Rr386869 | regulatory region 386869 | 1149 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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