rs49939235 SNP Detail

Summary

• ID
  rs49939235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:12582774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGGCAG CTTTGTCCTC
  TCCCAATTCT GCATCTTTGT CAGATATAGG AATGGACACA TGGTCCCCAC TTCAAGATAT
  TTAAACTGGG ACCACAGAGA AAGACTTGTT CTCCGTTGCA TGGCATGTCA ATCAATGGGG
  ACTAAAAGGA CAAGTAAGCA CAATTTGGGA GCCAAATGGA GAAGAACCTT AGTAGATGGA
  R
  CCCAGTCATT AAGAGAAGCT GAGACAATAG CCATTAAAAT GTCTAGCACA TGGCAGGCAC
  TTATACAAAA ACATGCATGT GCACATGTGC ATGTGGGTGT GGTATATGCA TAGTTCCATG
  TAAAGCCATT GTCTTCTTAG ATACTAAGAG AGGAATTTCT CCAAGTAAGT TGTTAGATGC
  AGAGCACCTC CACCCACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss52287013	NES15353690	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs49939235					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52287013	NES15353690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:12582774 () rs orientation: forward

Symbol	Name	Function Class
Rr266588	regulatory region 266588	975 bp distal
Rr266589	regulatory region 266589	1828 bp proximal
Rr386869	regulatory region 386869	1149 bp downstream