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rs49939235 SNP Detail
Summary
  • ID
    rs49939235
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:12582774 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATGAGGCAG CTTTGTCCTC
    TCCCAATTCT GCATCTTTGT CAGATATAGG AATGGACACA TGGTCCCCAC TTCAAGATAT
    TTAAACTGGG ACCACAGAGA AAGACTTGTT CTCCGTTGCA TGGCATGTCA ATCAATGGGG
    ACTAAAAGGA CAAGTAAGCA CAATTTGGGA GCCAAATGGA GAAGAACCTT AGTAGATGGA
    R
    CCCAGTCATT AAGAGAAGCT GAGACAATAG CCATTAAAAT GTCTAGCACA TGGCAGGCAC
    TTATACAAAA ACATGCATGT GCACATGTGC ATGTGGGTGT GGTATATGCA TAGTTCCATG
    TAAAGCCATT GTCTTCTTAG ATACTAAGAG AGGAATTTCT CCAAGTAAGT TGTTAGATGC
    AGAGCACCTC CACCCACACC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
ss52287013 NES15353690 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
rs49939235 SNP A A A A A A G A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52287013 NES15353690 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:12582774 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr266588 regulatory region 266588 975 bp distal
Rr266589 regulatory region 266589 1828 bp proximal
Rr386869 regulatory region 386869 1149 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory