rs49939459 SNP Detail

Summary

• ID
  rs49939459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:132291040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGTTAT AGCCCCAAGT
  ATTTCATTCA TTGAAATAAT AAAATATATT GCTTTCAGTA AAATATAAAA TACAATGAAT
  ATTGAGCAGC TATCATGAAA AAAAGAAAGA GAACATAGGT CTAGCAACAT ATTTCAGTGG
  CAAAAGCACT TACATAATGA CTTGTATTAA GTTCCTGAAT CTATATGTTA GAAGGATAAA
  Y
  GCTGCTACCA ATAAGATGGC ATCTGTCAGA ATGTGCTGAA GCATTTGAAA ATATGGAGAC
  ACATGGGTAG ACACACTCAG AGACTTGCAT ATTTTTATGA CCATGCATAA GATAATTAAA
  TATTAAAGTA ATATTTAGAA GAAATTAATC CCTGATATTG ATAGTTCATG TTGTACAGTT
  TAAAATTTGT TAACATCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133730226	ENSMUSSNP1992586	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49939459					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:132291040 () rs orientation: forward

Symbol	Name	Function Class
Prb1b	proline-rich protein BstNI subfamily 1B	within coordinates
Tssr2031	transcription start site region 2031	674 bp downstream