rs49939630 SNP Detail

Summary

• ID
  rs49939630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133271110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC CCTACCTCTA GACACTTTGA
  R
  TTCACAGAAA CAAAGTGGAT TCACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147498134	ENSMUSSNP6427068	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321341375	CHEV_4_133099714	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49939630					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133271110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15007	CpG island 15007	1602 bp proximal
Nudc	nudC nuclear distribution protein	Intron
Tssr43767	transcription start site region 43767	1819 bp downstream