rs49941098 SNP Detail

Summary

• ID
  rs49941098
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40345116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG CCTTGAACTT CTTTTTTTTT
  T
  AAAAGATTTA TTTATTATAT ATCTA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136329973	ENSMUSSNP5751141	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322916119	CHEV_9_40241405	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49941098					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40345116 () rs orientation: forward

Symbol	Name	Function Class
Gm51668	predicted gene, 51668	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676831	regulatory region 676831	67 bp distal
Tssr88924	transcription start site region 88924	1209 bp downstream
Tssr88925	transcription start site region 88925	1281 bp downstream
Tssr88926	transcription start site region 88926	1325 bp downstream
Tssr88927	transcription start site region 88927	1336 bp downstream
Tssr88928	transcription start site region 88928	1413 bp downstream