rs49941193 SNP Detail

Summary

• ID
  rs49941193
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155116980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA TTCCGAAAAT TGAACCCACA
  K
  CCTCATGCTT GCGGGCAAGC ACCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148049757	ENSMUSSNP2234174	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320572680	CHEV_2_155100796	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49941193					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155116980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12515	CpG island 12515	976 bp proximal
Gm75512	predicted gene, 75512	within coordinates
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha	1304 bp upstream
Rr568016	regulatory region 568016	692 bp proximal
Rr568017	regulatory region 568017	1187 bp proximal
Tssr21073	transcription start site region 21073	1279 bp upstream
Tssr21074	transcription start site region 21074	1358 bp upstream
Tssr21075	transcription start site region 21075	1420 bp upstream
Tssr21076	transcription start site region 21076	1443 bp upstream
Tssr21077	transcription start site region 21077	1522 bp upstream
Tssr21078	transcription start site region 21078	1536 bp upstream
Tssr21079	transcription start site region 21079	1559 bp upstream
Tssr21080	transcription start site region 21080	1657 bp upstream
Tssr21081	transcription start site region 21081	1830 bp upstream
Tssr21082	transcription start site region 21082	1856 bp upstream
Tssr21083	transcription start site region 21083	1872 bp upstream
Tssr21084	transcription start site region 21084	1903 bp upstream