rs49943176 SNP Detail

Summary

• ID
  rs49943176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108888885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTTTTT CCTCAGGGCA
  GATCAGTTAC CATGGGGGCC ATCTCAACTC CAGCAGGAGT CATCTCATCA ATTCTTGGTC
  TGCCCTGTCC CTCCCTCTCA GCCACACAAA TCGGACTCAG GAAACAAAGC TTGTGTTCTC
  AGCAGGAAGT GCAGTTTTAA TCAGTGGATA TGGCAAAGAC GGCGGTGGGA GCTGGCGCCA
  Y
  CTTGTGGCTG GATGCTCAGG CCCTCAGTTA CAGTCCATCT CAGAGTCTTC CAAATCAGTC
  TCCGCAGCAC AGAGGTCATC CAGGGCAGCC TCTGAGCCAA AAGGAAGAGG GGTCTGAGGT
  TAACTCGACA GCGTGGGGGC TTGGAGGCCC CCATGCTCCC TAGCGTCACA GGAACCAACC
  AGTCCCTTCT ATGCACAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss61451632	NES16833320	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs49943176					SNP	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451632	NES16833320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108888885 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	within coordinates
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	within coordinates
Rr686956	regulatory region 686956	1952 bp distal
Rr686957	regulatory region 686957	within coordinates
Rr686958	regulatory region 686958	134 bp distal
Rr686959	regulatory region 686959	within coordinates
Trex1	three prime repair exonuclease 1	94 bp upstream
Tssr91572	transcription start site region 91572	1546 bp upstream
Tssr91573	transcription start site region 91573	1412 bp upstream
Tssr91574	transcription start site region 91574	1179 bp upstream
Tssr91575	transcription start site region 91575	1132 bp upstream
Tssr91576	transcription start site region 91576	1046 bp upstream
Tssr91577	transcription start site region 91577	558 bp upstream
Tssr91578	transcription start site region 91578	111 bp upstream
Tssr91579	transcription start site region 91579	46 bp upstream