rs49943952 SNP Detail

Summary

• ID
  rs49943952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54687609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG AAAGTTATTT GCTTGTTTGC
  Y
  TGCTTGTTGC TTAAACAGTG TCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss62404899	NES17242331	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T		T	C		C
ss324637279	CHEV_14_55068989	CHEVERUD	SCREENING_POP	f	SNP									C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs49943952					SNP	C	C	C	C	T	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62404899	NES17242331	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54687609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6457	CpG island 6457	608 bp distal
Gm24424	predicted gene, 24424	88 bp upstream
Rr289213	regulatory region 289213	1209 bp distal
Rr289214	regulatory region 289214	409 bp distal
Rr297196	regulatory region 297196	608 bp distal
Rr389675	regulatory region 389675	1994 bp upstream
Rr404097	regulatory region 404097	778 bp downstream