rs49944680 SNP Detail

Summary

• ID
  rs49944680
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121911995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAC TATAACAAAG TTATCAACCT
  A
  TCTTAAATAA GCATATTTAA CATCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135735283	ENSMUSSNP2520124	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320908541	CHEV_3_121821264	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49944680					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121911995 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm40138	predicted gene, 40138			within coordinates
Rr584235	regulatory region 584235			268 bp proximal
Rr584236	regulatory region 584236			1568 bp proximal