rs49944978 SNP Detail

Summary

• ID
  rs49944978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153778712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAAAGCAT CTCTTGGGGA GGCTGGCAAT GAAGGACCGA
  GGCTTGCCGG GGTAGGAGAG AGAACACCCT GGCTCTTTGA AGTAGTGAGT GGGAAGGCTG
  R
  GGCCTGGAGG AGGTGGTAAA AAACAGGTGT GAAAACTGGG CCTGGGCTGG GCTGGGTGCG
  GGCAGCAGAA GGCCTCAGTG AGTGCTCAGG CCAGTTGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss148010201	ENSMUSSNP2800583	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320566486	CHEV_2_153762528	CHEVERUD	SCREENING_POP	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs49944978					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153778712 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	1425 bp upstream
Rr567755	regulatory region 567755	1343 bp distal
Rr567756	regulatory region 567756	1097 bp distal
Tssr20927	transcription start site region 20927	1426 bp upstream