rs49946260 SNP Detail

Summary

• ID
  rs49946260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81490464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACAGCAG CAAGAAACAA
  GAAGGCATGG AGAGGGACAA TTTCCACAAA TCCAGCCCCT GGACCATGTC TCATTTGTTT
  CAAGTGATCT ATCCCATGTG CTGAGGAATG ATGGTTATCA TAGAAGTACA CAGGTGGGCA
  GGAACAATTT CATAGGTAAG CGCCTTGTGT AGTCTTTGCA TGTGGCAGAT ACCTTAACAA
  Y
  AGGGCTGTGT CTGCAGTCTC TGCTCAGAGA GTTTCAGATC AAAGCTATAC TGTCAAGAGC
  TGTCTTCGTG TTTGCTGATG TCCCATTTGG AAGCCCAGCG GGTACGAAAC AGGACAGAAC
  ACATGTTAAC AGAAGGCTTG TAGGGGTGAA GGAGAAGGGC TGCATGAGTG GACAGCCCAA
  GTCACCTGGT CAGGAGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63200498	NES17463080	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49946260					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63200498	NES17463080	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81490464 () rs orientation: forward

Symbol	Name	Function Class
D18Mit2	DNA segment, Chr 18, Massachusetts Institute of Technology 2	1241 bp proximal
D18Mit3	DNA segment, Chr 18, Massachusetts Institute of Technology 3	1264 bp proximal
Gm30288	predicted gene, 30288	within coordinates
Rr347597	regulatory region 347597	1064 bp distal
Rr393975	regulatory region 393975	1447 bp downstream