rs49946534 SNP Detail

Summary

• ID
  rs49946534
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110810717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACA GAAGCTGTTC CCAGTTATAC
  S
  ACCAAAGTGT CATTTAGTCT TCAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136960982	ENSMUSSNP1230373	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323195233	CHEV_9_110884153	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49946534					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110810717 () rs orientation: forward

Symbol	Name	Function Class
Lrrc2	leucine rich repeat containing 2	within coordinates
Rr207418	regulatory region 207418	1284 bp proximal