rs49946629 SNP Detail

Summary

• ID
  rs49946629
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30734415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGAGTCTG CATATCTCTG TCCTGTGTGT CTCTGTATCG
  CTCATCGGGG CACTACCACG TGACCGAGCC CAGGAAGAAA AGGACAACAG AGGAAGAGAC
  K
  TGCACTCTAG GAACAGCGCC CCCTGCTGCA ACCAGAACAA CCGCCCAGCT GGATGCAACC
  AGCAGGCTAG GCCGAGAATC ATCCCTGGGG TGGTTTGTAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60989546	NES16136166	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49946629					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989546	NES16136166	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30734415 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	1853 bp upstream
Gm71772	predicted gene, 71772	1999 bp upstream
Rr644978	regulatory region 644978	632 bp distal
Rr644979	regulatory region 644979	within coordinates
Rr644980	regulatory region 644980	13 bp proximal
Rr644981	regulatory region 644981	1909 bp proximal
Tssr2191	transcription start site region 2191	470 bp downstream
Tssr65830	transcription start site region 65830	238 bp upstream
Tssr65831	transcription start site region 65831	1998 bp upstream
Tssr71891	transcription start site region 71891	1467 bp downstream