rs49947074 SNP Detail

Summary

• ID
  rs49947074
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139899126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGACATT GGAAGAAGTC TCATTGTAAA ACTTTCCAAG
  CAGGGTGTAG AGAAGGCCTT CACTCCATTA ATAGCTAACA GACTCCTCTG GCAGACACAA
  A
  TGCAGTCCTC AGTGTTGTTC AAAGCAAGAA AAGGAAAATG TTATTTCCCT TTCTATCCCA
  CCTCACCTGC AAAGCCTTAC CTGCATGCAC CAGCACAAA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147670437	ENSMUSSNP5272704	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49947074					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139899126 () rs orientation: forward

Symbol	Name	Function Class
Tasp1	taspase, threonine aspartase 1	within coordinates
Tssr20476	transcription start site region 20476	1186 bp downstream
Tssr20477	transcription start site region 20477	1159 bp downstream
Tssr20478	transcription start site region 20478	1143 bp downstream