rs49947307 SNP Detail

Summary

• ID
  rs49947307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32906486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCAGTAC CATGCAACTG
  AGACTCCCTT CTCAGGTGAG TAGAGGCCCT GTCAAGTTGT CAATTACAAC TAACAGGCTT
  CAATGTTGCC TAGACACCCC TAAGTCCCGG TTGAGACCTT CCCTGATGAT GGTCCCTGGG
  GCTGAAATTA ATACCACCAG AGAACATTCA TCTTCGCAAG CCAAGGTGGC TATCTCTGAC
  R
  TAGGCTGTAT ACCTTCTCCA TTGGCCCTGG GATAGACCCT TGAGACTCAG CCATAACCCT
  GAGAAAGATG GAGCAGGACT CAGCACAAAC CCATATAGTG TAGGCTACTT GTGCAAATCT
  TCACATCATG TTGCTGTCCT AAATATTGTA GGTATTTGTA AGACAATGGT GTTTATGTAT
  CTAAATACAT CTATATATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62679272	NES17312415	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49947307					SNP	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679272	NES17312415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32906486 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f15	cytochrome P450, family 4, subfamily f, polypeptide 15	within coordinates
Rr337381	regulatory region 337381	1029 bp proximal
Rr339615	regulatory region 339615	285 bp distal
Rr341335	regulatory region 341335	115 bp proximal
Tssr143733	transcription start site region 143733	1916 bp downstream
Tssr143734	transcription start site region 143734	1897 bp downstream
Tssr143735	transcription start site region 143735	1869 bp downstream
Tssr143736	transcription start site region 143736	1835 bp downstream
Tssr143737	transcription start site region 143737	1406 bp downstream