rs49947840 SNP Detail

Summary

• ID
  rs49947840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32666886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGTCTTA AGGCCTCAAT GCATGCCATT CCAAACTAAC
  ATTCTCAGTT CTCCTCTACT TTGTCTTATG TTCCCCCCGG CATCCCTCAT TGCTGCCCCT
  Y
  CCTCATCACT GATCAGTGAA AGTGGAGTGT AATGCATCCT GACACGTGAC TGAAAGTGTA
  GTTTCAGCCA TCACAACACA AATCCAAGAG TCCAGACTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136251170	ENSMUSSNP317684	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49947840					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32666886 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr676252	regulatory region 676252	478 bp proximal
Tssr84301	transcription start site region 84301	1129 bp downstream
Tssr84302	transcription start site region 84302	940 bp downstream
Tssr84303	transcription start site region 84303	824 bp downstream