rs49948355 SNP Detail

Summary

• ID
  rs49948355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70346775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTAAA GGCGTGCATC
  ACCATGACCG GCTTAAGCCA TCTTATTCTT AAAAAAAAAA AAAAAAAAAA AAAAAGACTT
  TCTAGTTAAC ACAGTTACTA GATAAGAAGA AAGCATAGGT TCAAGTATTT GTAAAGACAA
  GGAACATTTT ATCATTATTT TCCTGTATCT GTTTGGAAAC TCTAATTAGT CTCCCTTCTG
  Y
  AGTTGAATTT CTAAAGCTAT ACAGGTTAAG TATGTAGGTA TGTTAGTGTG GGGGCGATTA
  GAAGGTAAAT ATATCCAGCA AGATAAAATG AAAAAGAATC CCATTTCATG GGATTAAAAA
  AAATTAATAA CTGCTATGGA ACATTCCTAA GACATATAGA GCTAAAATTT TTACATTTAA
  ATATTACTTT GGGCTCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62449845	NES17257098	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49948355					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62449845	NES17257098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70346775 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bin3	bridging integrator 3			Intron
				Noncoding-Transcript-Variant
Rr494842	regulatory region 494842			1894 bp distal
Rr494843	regulatory region 494843			356 bp proximal
Rr494844	regulatory region 494844			1645 bp proximal
Rr494845	regulatory region 494845			1739 bp proximal