rs49949251 SNP Detail

Summary

• ID
  rs49949251
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172116688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCATCCTGA CTCACCATCT GAGTGTTTTG TGGAAGGCTT
  TCAGCCTGGG GATCAACAGA ACTGAGAGCT TCCTGTAGAG AGGTGATTTC CAGCAGAGTC
  W
  GTCTGCCCTT GGCCAGTGCC CTTGGCCCTG TTCTCCAGAG ATGACTACTA CCGCAACGTT
  CAGTTCCCTC AATGCCCTTT ATATGCGGAG CTTTAGCCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss120008634	PARCsnp_1.18395	PARC_SEQ	INBRED	f	SNP		A	T
ss120011719	PARCsnp_1.08127	PARC_SEQ	INBRED	f	SNP		A	T
ss146186710	ENSMUSSNP2164911	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs49949251					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172116688 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	within coordinates
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	266 bp downstream