rs49949380 SNP Detail

Summary

• ID
  rs49949380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:76789522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGC GCATGTGTGC
  CAGCCATCAG TCAGTTCTCC ATTGAAGAGG AAAACAAAAA CTATACATCT CCCTTATCTT
  TTACTCCCAT TTGTAAAGAT TTCTGCAGTC AAACCAAGTC AGGTTTATTT TCTTGGTGCA
  TTTATTCAGG GGGCCCTGTG GATGACCCAC ACCCAGAACA AACATCTCTG CTTATACCTG
  Y
  CTCCTCTTAG AAGACTCTCT TGAAATTCAC ATTCTCATGA CCCAAGTTTG GAGCTCAACT
  CATCTTGCCT TCCTTAGGCA CAGCCACACC TTCAGGCTGC TCAAGGGCAT GCAGACCCAG
  ATACTCTTAC ATCGAGTTGG TACCTAGGGA AGGTGACTGC TCGACCCTCA AATGAAAAAG
  CACATCTGAT TTGGAAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144717325	ENSMUSSNP2461191	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49949380					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:76789522 () rs orientation: forward

Symbol	Name	Function Class
Gm70762	predicted gene, 70762	1711 bp upstream