rs49949405 SNP Detail

Summary

• ID
  rs49949405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60660439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA AATGCTGGCC TGTAACTCCT
  R
  ATTCTCTTGC CTTCACCTCC CAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147246247	ENSMUSSNP4767397	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325639833	CHEV_18_60687021	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49949405					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60660439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	646 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	940 bp upstream
Gm58903	predicted gene, 58903	1055 bp downstream
Rr351670	regulatory region 351670	1352 bp proximal
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	1133 bp downstream
Tssr153448	transcription start site region 153448	1381 bp upstream
Tssr153449	transcription start site region 153449	1288 bp upstream
Tssr153450	transcription start site region 153450	1264 bp upstream