rs49949444 SNP Detail

Summary

• ID
  rs49949444
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93614237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA CACAGAGAAA CCCTACCTCA
  A
  TGATAATAAT AATGGATGAT GATGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148573985	ENSMUSSNP3140828	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325280271	CHEV_16_93817594	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49949444					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93614237 () rs orientation: forward

Symbol	Name	Function Class
Gm30881	predicted gene, 30881	within coordinates
Rr325602	regulatory region 325602	236 bp distal
Rr325603	regulatory region 325603	1163 bp proximal
Rr370142	regulatory region 370142	657 bp downstream
Tssr142206	transcription start site region 142206	945 bp upstream