rs49949511 SNP Detail

Summary

• ID
  rs49949511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46991223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAACTCG GAGGCAGGAG
  GTTATACGTT ATCTCTGGGT CTCCAGCATT TCCCACCAAT AGGCCATTTT CAACATCCCA
  GCCCCTGAGG TCGGCTTCCC CTCCCTGCTC GCGCCCCTTC CCTTCTTAAT TTCCCGAGAG
  CCTTGCAGTT CCTCCTCCCA CCACTTCAAG GTCCACACCA GAGCCCTCTA ACTCGTCTAA
  R
  TTCACGAAGG GAAGCAAGCC ATTCTTATCC CCTGCCAACC ATACCGCTCT GTGAATGAGA
  CTGGTCTCCG GTTGTAGTCC ACCTTTCTCA GCCGCCCCTC CCCCACGACG CCACACTGCC
  CCCTCCCCCT GCCATTATGC TCAGCTTCCT GATTCTCTTC GGAACCCACT CGTCCACTTC
  TCTCAGCGCT TCCTCCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62758067	NES17350945	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49949511					SNP	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758067	NES17350945	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46991223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	157 bp proximal
Klhdc3	kelch domain containing 3	within coordinates
Mea1	male enhanced antigen 1	within coordinates
Rr405317	regulatory region 405317	492 bp upstream
Rr527794	regulatory region 527794	948 bp distal
Rr527795	regulatory region 527795	within coordinates
Tssr5136	transcription start site region 5136	479 bp downstream
Tssr5137	transcription start site region 5137	638 bp downstream
Tssr144870	transcription start site region 144870	1504 bp downstream
Tssr144871	transcription start site region 144871	1470 bp downstream
Tssr144872	transcription start site region 144872	127 bp upstream
Tssr144873	transcription start site region 144873	683 bp upstream
Tssr144874	transcription start site region 144874	741 bp upstream
Tssr144875	transcription start site region 144875	1679 bp upstream
Tssr144876	transcription start site region 144876	1738 bp upstream
Tssr148364	transcription start site region 148364	1715 bp upstream
Tssr148365	transcription start site region 148365	1675 bp upstream
Tssr148366	transcription start site region 148366	1653 bp upstream
Tssr148367	transcription start site region 148367	429 bp downstream
Tssr148368	transcription start site region 148368	452 bp downstream
Tssr148369	transcription start site region 148369	467 bp downstream
Tssr148370	transcription start site region 148370	489 bp downstream
Tssr148371	transcription start site region 148371	550 bp downstream
Tssr148372	transcription start site region 148372	573 bp downstream
Tssr148373	transcription start site region 148373	1604 bp downstream
Tssr148374	transcription start site region 148374	1616 bp downstream