rs49949786 SNP Detail

Summary

• ID
  rs49949786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72533711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAAGTACA CTGTAGCTGT TTTCAGACAT ACCAGAAGAG
  GGCATCAGAT CTCATTACAG ATGATTGTGA ACTACCACGT GGTTGCTGGG ATTTGAACTC
  Y
  GGACCTTCGG AAGAGCAGTC AGTGCTCTTA ACTGCTGAGC CATTTCTCCA GCCTCCTATT
  TTTTTTGAAA AAAAATTTTT TTTGTAATTT GATTATATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133285571	ENSMUSSNP1751499	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321822102	CHEV_6_72506722	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49949786					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72533711 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	925 bp downstream
Tssr57143	transcription start site region 57143	899 bp downstream
Tssr57144	transcription start site region 57144	610 bp downstream
Tssr57145	transcription start site region 57145	570 bp downstream
Tssr57146	transcription start site region 57146	551 bp downstream
Tssr57147	transcription start site region 57147	606 bp upstream
Tssr57148	transcription start site region 57148	1945 bp upstream
Tssr61469	transcription start site region 61469	1061 bp downstream