rs49950686 SNP Detail

Summary

• ID
  rs49950686
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGG CTTGTGGGAG
  CCCTGGGCTC ATTTCCTGGT CTCTCTGCCG TAGTGTGCAT TTCTAGAAAT GGTTTAAAAA
  TTCTCAGCGA CTGGTAAGAG AGAGAAATCG AGTTTCTTTT TCTTTTTTCT TGCTAGCCCA
  TCATATAAGG GTAAACTGGG GGGCATGAAA GTAAAACAAC GAATGGTTTT GCTTTCCTTT
  W
  ATCCGTGCAT TGAGGAAAAG GTTATGGTGT AGCTGGTATA TCAGACTGTC GATGGAAATT
  ATTTCCTATT TAACAAATAG GCCCAGAGAC GAGTAACTCG TTTGGGAAAG CCTCTTTTAA
  AATGCCTTCA GGGGCTGGAG AGATGGCTCA GCGGTTAACA GTACTGACTG TTCTTTCAGA
  GATCCTGAGT CCTATCCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874529	ENSMUSSNP3966508	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320958010	CHEV_3_127600582	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49950686					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1141 bp distal
Fam241a	family with sequence similarity 241, member A	1341 bp upstream
Rr398009	regulatory region 398009	1091 bp downstream
Rr584896	regulatory region 584896	1645 bp distal
Rr584897	regulatory region 584897	850 bp distal
Tssr35608	transcription start site region 35608	1431 bp upstream
Tssr35609	transcription start site region 35609	1394 bp upstream
Tssr35610	transcription start site region 35610	1327 bp upstream