rs49951360 SNP Detail

Summary

• ID
  rs49951360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85591801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGGATGT TCTGTCATGA ACTTACAACT GGTCTTTGGT
  CATTTTGGAA ATACGGAGAC TGGCCGTAGA GGACATGAGA TCGCCAACCA CACATTGACA
  Y
  GTTTGCATGC ATGAAACATT GCCAGCAAGA GCTGCTCTGG GTAGTGAACA GTACCCTCCC
  CTCATCTTCC ATGTGCCCCT TAGTGGCCCA AGCCCTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148271316	ENSMUSSNP1043677	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49951360					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85591801 () rs orientation: forward

Symbol	Name	Function Class
Gm34622	predicted gene, 34622	1271 bp downstream
Lncppara	long noncoding RNA near Ppara	76 bp downstream
Mirc31	microRNA cluster 31, including Mirlet7c-2 through Mirlet7b	197 bp distal
Mirlet7b	microRNA let7b	197 bp downstream
Mirlet7c-2	microRNA let7c-2	903 bp downstream
Rr507292	regulatory region 507292	1191 bp distal
Rr507293	regulatory region 507293	220 bp distal
Rr507294	regulatory region 507294	918 bp proximal
Rr507295	regulatory region 507295	1910 bp proximal