rs49951888 SNP Detail

Summary

• ID
  rs49951888
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:5662209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATTAGCT CTGCACTTCA
  TCCCAGGTTG ACTTCTCCTA CATCACCAGC CCTTCATCCA TGGTCCCACC TCCCACAATG
  CCTTAGGACA CTTTTCTCTC CTTTGGTGCA AACAATACTA TCCGCCCCCC CCCCCTTTTA
  AATCAGGACC AGATCCCACC TCAGGGTACA GCCTAAGGGT CGAGTTTCCT TTCACAAGGC
  W
  AAAAAGGCAA AAAAAAAAAA AAAAAAAAAA AAGTTAAGAT TTATGGCCAG GAGCACAGGG
  GACAAGAGAA GCAGGATAGT GGGAGAAGAA CATGGCTTTC CAACTGATGG ACCACAGGTG
  GGGCATGGGG GGGGGACCAA TAAGGAGACA GGTGAGAGAT ACTGGGGGTT GAGGTGGAAT
  ATCGGGGACC CCTACAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146274405	ENSMUSSNP2212822	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49951888					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5662209 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk1d	calcium/calmodulin-dependent protein kinase ID			Intron
				Noncoding-Transcript-Variant
Rr551239	regulatory region 551239			635 bp proximal
Tssr22412	transcription start site region 22412			within coordinates