rs49952748 SNP Detail

Summary

• ID
  rs49952748
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75565217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGCTTCTC TGGCTAGGTG CAAATCAATA GTCCTAATTG
  GCGACAGGTC TACTAGTTGT GGGAAAGAAC CTCTACTGGC TTTCCACTTG CGTAAAATCT
  W
  GTATCTTTTA AGTTTCTAGC TATCTATGTA CTTTATCTAT GATAGGTTGG TCTATGTCTA
  TCTGTCTACC TACCTATCTA CAGATAGATA TTATCACAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148372372	ENSMUSSNP4254993	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss325251684	CHEV_16_75768574	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49952748					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75565217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	1320 bp distal
Hspa13	heat shock protein 70 family, member 13	642 bp upstream
Rr325470	regulatory region 325470	16 bp distal
Rr404916	regulatory region 404916	1014 bp downstream
Rr404917	regulatory region 404917	116 bp downstream
Tssr141799	transcription start site region 141799	1532 bp upstream
Tssr141800	transcription start site region 141800	1254 bp upstream