rs49953300 SNP Detail

Summary

• ID
  rs49953300
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:64518117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATATAT ATATATAGAG
  AGAGAGAGAG AGAGAGAGGA GGGGGATTAA GAATAAGCAA TCATTGTCCA TGGATGTACT
  ATAAAAATCA ATGTATATTT TAAGTAATAA TGACAACCAT AAATTCACTT CATTTTAAAG
  TAGTTATTTT ACATGCTTTA GATTTGAATG AACATAACAC ACGGGTCTTT ACATTGTGAC
  W
  GCTTTTATTC ATTGTCCAAC CTGTATGCTT AATCGTTTTA GGGATCCTTT TACTTTAATG
  TATTCATAAG AGTTCTTCCA GATAGCATCT CATTTTCTAA AGAATGACCT TCTAGAATCC
  AATTAAATTA TTAGTTTAAG TTAACACCTG ACGATAGCTC AGTTCTTTAA CTCTATTTTA
  ATGGTACCTT CTATTTTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61636036	NES17586921	PERLEGEN	MM_PANEL2	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs49953300					SNP	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61636036	NES17586921	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:64518117 () rs orientation: forward

Symbol	Name	Function Class
Fscb	fibrous sheath CABYR binding protein	within coordinates