rs49953536 SNP Detail

Summary

• ID
  rs49953536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65138921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTAATTG AGGGAAATAT
  GTAATTAAAA AAAGAATAAA TTAAGACAAA ACATGTGTCT ATTTGAAAAA CCCATATTAT
  TTGTGCAGTT CTACAAAAGT AAGTATGCAT GTGGGCAAAG ATGAATATGT TTACCAAATG
  GTCTTAAATA AATACTTAAG CATGAAAAAA AAAACATGTG AATATATATG TATTGAAGGT
  R
  TGTGCATTTA CACGTGTGTG CATTTGCATG CATGTGCATG TTTATGTGAC TGTGAGTGTA
  GGTATGTGCA GAAGACAACT TTGGGTATAG ATATTTGCCT TTCCCATTGC TTGAAGAGTC
  TCTTGTTTAT TGCAGCTCAC AAAAGGCTAT TTGGCTTATG AACTTCTTTG GATTCTGCTT
  CTGTGTCCCA TCTGACTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60744609	NES16381399	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49953536					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60744609	NES16381399	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65138921 () rs orientation: forward

Symbol	Name	Function Class
Cryga	crystallin, gamma A	631 bp downstream
Gm28845	predicted gene 28845	857 bp downstream
Tssr102	transcription start site region 102	886 bp upstream
Tssr7112	transcription start site region 7112	631 bp upstream
Tssr7113	transcription start site region 7113	746 bp upstream
Tssr7114	transcription start site region 7114	756 bp upstream
Tssr7115	transcription start site region 7115	772 bp upstream
Tssr7116	transcription start site region 7116	833 bp upstream
Tssr7117	transcription start site region 7117	861 bp upstream
Tssr7118	transcription start site region 7118	891 bp upstream
Tssr11968	transcription start site region 11968	661 bp downstream
Tssr11969	transcription start site region 11969	691 bp downstream
Tssr11970	transcription start site region 11970	865 bp downstream
Tssr11971	transcription start site region 11971	888 bp downstream
Tssr11972	transcription start site region 11972	910 bp downstream