rs49955197 SNP Detail

Summary

• ID
  rs49955197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78319862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACAGCT GGATCCAGAC
  ATTCACAGCC CATCTGAGTC AGCTCAGGAG AAAAGGGAAG CCATATGGGG CTGAGGATAC
  TGGGATACCT GAGATTTGAT GATATTTCTG ATCGGGTGAC TTCAGAGTGT GTATTCAACA
  TCTAAAGAGA CAGGCAGAAT ATATTTCAGG AGTGGTATGT GCCAAACACC CAGGGATAGC
  R
  GCTGGTCTTT GCCTTTCCTT GCCTCCCCCA GCGGGTTCTT GAGCTGCTGG CATCCTTAGA
  CCCCACTTTA CCCCTGTAAC CTCAATTGCT TCCCTTCCAA CTTCCAGTCC ATGATGCCAG
  AAGGATGTGG ATGAGTGTGC CGTTGCCTCA CCCTGCGGCC CCCATGGTAC CTGCACCAAC
  CTGCCAGGGA GCTTCAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52381068	NES15269761	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49955197					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52381068	NES15269761	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78319862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1783	CpG island 1783	1542 bp distal
Gm9978	predicted gene 9978	542 bp downstream
Rr225087	regulatory region 225087	1061 bp distal