rs49955438 SNP Detail

Summary

• ID
  rs49955438
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32201625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAACTTTT CCTCTGACTA ATGACTGAAG TCACAGTGAG
  TCATTCTCTC TGCTGGAGGT GCCACTAGCT GAGGTACAAA AGCATCCCTA TAGCAGCTGG
  K
  GGGGACCAAC TGTTTGAGTG TCCCCTTTGT GCGAGGTAGT TCTCACCCCC ACACCATAAG
  GCTCAATGAC ATACACTAAA GGGATATCTG GTATGTCTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss131932944	ENSMUSSNP4569517	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49955438					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32201625 () rs orientation: forward

Symbol	Name	Function Class
Nprl3	nitrogen permease regulator-like 3	within coordinates
Rr349	regulatory region 349	256 bp distal
Rr350	regulatory region 350	within coordinates
Rr923	regulatory region 923	261 bp distal
Rr1084	regulatory region 1084	within coordinates
Rr444552	regulatory region 444552	within coordinates