rs49956281 SNP Detail

Summary

• ID
  rs49956281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:34079606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAGGCTG GGAAAGGAGT
  GTACTGATGG GGGGTGCTTC AAAATGCATG GAGATAGTTT TGGAACCATC AAAGGCCCTG
  TTTCCATTGA GAGTGCATGT GACCCCTACT CTCATAAGGG TCCTCTCTTG CTATTCCCCT
  GCCAGCTTTA GAATGGCCTC TGGACCCCTC CCTATAAACC CTTCGTTGTT CTCAGCTTGG
  Y
  TCTCCTCTCT GAAGCTCACT AGCCCCAACA GACCCTTGTC AAAAGTCAGC CCACACAGCC
  CAAGGTGCTG TTCCTTCCCC CTGCCCTTCA GGCCCTGCTG CCCAGGAACA CTGCCCTTCC
  TAGGACAGCG TCTCTGGGTG AGCACTCCAG TGATGTCACT CGACTACCCT TTGCCCAGAC
  ACACACACCC CCAAATGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139269665	ENSMUSSNP3325448	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49956281					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:34079606 () rs orientation: forward

Symbol	Name	Function Class
D14Mit45	DNA segment, Chr 14, Massachusetts Institute of Technology 45	302 bp distal
Tssr128062	transcription start site region 128062	606 bp downstream
Tssr128063	transcription start site region 128063	1397 bp downstream