rs49956354 SNP Detail

Summary

• ID
  rs49956354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:59374471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCATGGA ATATCCAGGC
  AATTCCAATT TTCTCCAAAT GACTTGAATT AAAATAGAAG CCCTTCTAAC AGGCTTCAGA
  GGTGACTCCA CAGGAATTTT GTACAAAACA GCACAGAACA AGCTGTGCGT ATTTCTTCTT
  CATACACTAT CCTATACTTT TAATATAGTT ATAGTTTACT GAGTGTTATT CGGCTGTGGA
  Y
  TCTACTGCAA GAAGCAAGAG AAGTAATGCA GATAGGATAA TTACTTAAGT AGTTAGAGTT
  TACTAAAACA ATTGTAGAGA AAAGGTCTTG GTGTACTGAC GCTTGAGCTG AAACCTACAG
  TGTAACTGGA CCATGTGAAG AATCACAGAT AGGCAAATAG TAACATAGAA AATAATCAGA
  ATCTGCAGCT TGGCCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62814821	NES17369871	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49956354					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62814821	NES17369871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:59374471 () rs orientation: forward

Symbol	Name	Function Class
n-TVcac3	nuclear encoded tRNA valine 3 (anticodon CAC)	1232 bp upstream