rs49957062 SNP Detail

Summary

• ID
  rs49957062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102248657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGCATA CCACACAGCA
  GAGCGGGCCA GCTAGAACCA GGTCACAGCG GGCCAGGATG GACCAGCTGG TCCAATCTAA
  GTCAGGGTAA GACTAGACTG GCCAGGAACA GGTGGAGTTC AACCCACTGC ATCCAAATAG
  TGAATCTAAA GTCAAGCCAG TCCAGGGTGG GAAACCTGGC CTCTTCTGTC CTCCCACAAG
  Y
  TCCCTGGGGA TAAAACCTGA CCTCTTCTGT CCACAAGCTC CTTGGCTAAC CAGCCACATC
  TCCCTCCATC CCCCCAGCCC TCCACACTCA CTCTTTCTGT CATGAGAGTT GCTGCAGCCC
  TGCCCAGCTG GGTATAGTCG ACATGCGGAG CCTCAGGTCC CAGCAGAACA AGAAGGAAGC
  CCACAGGCTC TGGCAACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132735934	ENSMUSSNP451469	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49957062					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102248657 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	within coordinates
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111049	transcription start site region 111049	1689 bp upstream
Tssr111050	transcription start site region 111050	1639 bp upstream
Tssr111051	transcription start site region 111051	1591 bp upstream
Tssr111052	transcription start site region 111052	1381 bp upstream
Tssr111053	transcription start site region 111053	1325 bp upstream
Tssr111054	transcription start site region 111054	992 bp upstream
Tssr111055	transcription start site region 111055	920 bp upstream
Tssr111056	transcription start site region 111056	735 bp upstream
Tssr111057	transcription start site region 111057	659 bp upstream
Tssr111058	transcription start site region 111058	646 bp downstream