rs49957149 SNP Detail

Summary

• ID
  rs49957149
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14914186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGGGTT CCTGCTATGA
  GAGACCACGA AAGACACTCC CCACATCCCC AACCCCTGCC ACCCCGGGGA CAAAGACAGC
  AGTGAATGTT CTTGGCAGGT CAATAAGTTT GCAGAGCAAG GACGGTGAGG ACGCCACTGG
  GCTAAGTGTC AGAGGACACA GCTGGACTTC CCCTTTAGAC CCCTGGAAAC CGTAGCCTTT
  W
  CTGAAAGATC ACAGCCAGTG AAATGTCTTA GAAATAAAAA GGTACCTGGT GTGTTTGCAA
  GTGAATGGTG ACCGACGCCA GTACTCTGTC TGTCCTGAGG GGGACTAGCT GCGGCAGGAG
  AGGAGAGGCC TGGCCAGGGA GGCTGCAGAC ATCGGACTGG CTCTCTCTGC CTCCCGGCAG
  TGACCGGCTC CTTTATACGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60540264	NES16561545	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49957149					SNP	T	T	T	T	T	T	T	T	T	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60540264	NES16561545	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14914186 () rs orientation: forward

Symbol	Name	Function Class
Thbs2	thrombospondin 2	within coordinates
Tssr146500	transcription start site region 146500	158 bp downstream
Tssr146501	transcription start site region 146501	299 bp downstream