rs49957838 SNP Detail

Summary

• ID
  rs49957838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30166817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA ATCTAGAGGA ACTGCTGGCT
  R
  GCAGGGCCAG TGATGGAAAT GCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133095090	ENSMUSSNP538701	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321776194	CHEV_6_30116818	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49957838					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30166817 () rs orientation: forward

Symbol	Name	Function Class
Mir182	microRNA 182	826 bp upstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	within coordinates
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Rr627709	regulatory region 627709	283 bp proximal