rs49958552 SNP Detail

Summary

• ID
  rs49958552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45015799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGTTTC TGGAATGGGA
  GGAGGTGTTG GGGAGGATAC CCATGGCTCC GGGAGGGAGG CAAGAGTGGT GAGGCCTCCT
  GAAGAGGTTG TTTGTAGAGG GCAGGGTTTT CCCCCAAGCA GTAGGAAACA GGGAGAACAA
  ACCCTGCTTA GGACTAAAGT TGCCAGTCAA GAGCACCAGC ACCATAGGTA GGAGCCTTCC
  R
  CTGTGCCCAG CTCTGGCTAA ACTAGATGTA ATAAAGTATG TTAGGTCATT GGACAAGACT
  GGTAGGAGAC TGAAAGGTAA AATTAGTGGG TAGGGATGTA GTTAAGGTTA TAGAGTGCTT
  GTCTCCCAGG CATGAAGCCC TGGGCTTGAT TCCCAGCACT GTGTAAGTCA GTTGTGGTAG
  TACATACCTA TAATTCCGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61388963	NES16766752	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49958552					SNP	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388963	NES16766752	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45015799 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	558 bp distal
Rr677841	regulatory region 677841	1218 bp proximal
Tssr84725	transcription start site region 84725	1617 bp downstream
Tssr84726	transcription start site region 84726	639 bp downstream
Tssr84727	transcription start site region 84727	608 bp downstream
Tssr84728	transcription start site region 84728	581 bp downstream